RESEARCH ACTIVITY

 

 

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 Bioinorganic chemistry:                                                                                             Top

Understanding of structure-function relationship of several oxomolybdo and oxotungstoenzymes This aspect has several domains of Archaeal, Bacterial and Eucarial origins. Representative systems  as structural and functional models of Sulfite Oxidase and DMSO Reductase family of enzymes: Dissimilatory Nitrate Reductase,  Polysulfide Reductase, non redox Acetylene Hydratase,formate dehydrogenase and aldehyde ferredoxin oxiodoreductase

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Black geyser in deep sea hydrothermal vent. This  serves as the primitive environment on young earth and life still exists in such hostile niche with high hydrostatic pressure and high temperature under anoxic condition in the dark. The extremozymes found there were modeled as:

 

Functional model of P.furious ferredoxin aldehyde oxidoreductase

 

 

A model for formate dehydrogenase

 

Feed Stock Chemistry

  

 

Bacterial Origin:                                                                                                                                    Top

TMNO Reductase

Mo-cofactor from oxidised TMANOR

 

Nitrate Reductase                                                                                                                                            Top

 

 

Chemistry of [Et4N][MoIV(SPh)(PPh3)(mnt)2] as an Analogue of Dissimilatory Nitrate Reductase with Its Inactivation Similar to
Single Point Mutation

 

Polysulfide Reductase                                                                                                                                      Top

 

Structural and Functional Analogue of the Active Site of Polysulfide
Reductase from Wolinella succinogenes

 

Mechanism

Eucarial origin:                                                                                                                                                    Top

Hepatic Sulfite Oxidase

How works in mitochondria

 

 

 

   molekel

Native cofactor in active site                           Supper imposed native and half reduced synthetic model

 

This reaction follows Michaelis -Menten Kinetics with  sulfate and phosphate inhibition similar to native protein

 

 Properties  of the synthesized complexes with the understanding of structure-function relationship are subjected to  structural studies like detailed spectroscopic analysis followed by single crystal X-ray crystallography. Detailed redox  reactions are studied to evaluate the basis for atom or electron transfer reactions. A rare  type of induced electron reactions  are also of interest to us. The  kinetics of  reactions with  native substrates or model substrates are followed using  synthesized systems with inhibition studies. Model active site-substrate interactions are correlated with electrostatic potential computations to understand in vivo enzymatic reactions. Current and sustained studies include to model (with the theme: 'stabilization of unusual oxidation states of transition metals' involving green chemistry): nitrogenase, molybdenum and tungsten dependent pterin(cofactor) containing oxido-reductase class of enzymes, non-redox enzyme acetyelene hydratase, hemo-proteins ( heme as prosthetic group) like cytochrome P-450, NO-synthase, cytochrome-c oxidase, nitrophorin, cofactor F430, and methane monooxygenase.

 

On the evolution of porphyrin:                                                                                                                                 Top

Metal porphyrinogen and dehydrogenase reaction:  Porphyrinogen, its complex  redox chemistry: Structural studies include  single crystal X-ray crystallography followed by detailed spectroscopic analysis which  are correlated with electrostatic potential using  DFT calculation. 

    

Tetrakis-cyclohexyl porphyrinogen

          

Tetrakis-cyclohexyl Fe(III)porphyrinogen

 

Tetrakis-cyclohexyl Fe(II)-Br porphyrinogen                                      Tetrakis-cyclohexyl Fe(II)-I porphyrinogen

 

Metalloporphyrins                                                                                                                                              Top

 

Reversible Penta- and Hexacoordination Motifs in [Co(TMPP)] Resulting in Interchange of 1D and 2D Supramolecular Designs

 

 

Inorganic Chemistry:                                                                                                   Top

Activation of small molecules :Stabilization of unusual oxidation states of V, Cr, Mo, W, Ni, Fe, Co using NO+, CN- , C2H2, Sn2- and other p- bonding ligands and activation of small molecules like N2, CO2, CO, C2H2, CH4 and O2 involving synthesized transition metal complexes. . 

pH Dependent Interconversion of Dimeric and Monomeric Moybdenum(IV) / Tungsten(IV) Bis(dithiolene) Complexes .   

 

 

Metal clusters : Synthesis of homonuclear and heteronuclear metal sulfido and oxo clusters. Metal sulfido cuboidal to cubane core conversion  using electron precise rule. Synthesis of water soluble molybdenum and tungsten Keplerate . Copper -molybdenum antagonism in Teart disease, therapeutic use of thiomolybdate in Wilson disease. Structural model,  [PPh4][Et4N]2[S2MoS2CuS2MoS2]  of the hetero metal sulfido core of the orange protein (ORP) of the sulfate reducing organism, Desulfovibrio gigas :

Structure of native Orange Protein from Desulfovibriogigas

Structural mimicry : Structure of the synthesized  model of Orange Protein

 

Supramolecular host-guest Chemistry: H-bonding interaction:  An efficient and eco-friendly protocol was designed to synthesize calix[4]pyrroles and thermally induced conformational changes in meso-tetramethyl tetrakis(ethyl)calix[4]pyrrole neutral host-guest adducts were examined.

Halogen adduct

                     

 Methanol adduct                                             Ethanol adduct                                                                                             

 

 

DMF adduct

DMSO adduct of β-substituted Calix[4] pyrrole

 

 

Nanochemistry:                                                                                           Top

Fullerenes and  carbon nanotubes.  Easy methods of preparation of CNT.  CNTs with several junctions. Functionalization of carbon nanotubes and investigation on their properties using EPR, NMR, electrochemistry, fluorescence, uv-visible-nir ir., ORD, FTIR, Raman spectroscopy, magnetisms , surface studies by AFM, TEM, SEM in relevance to their ‘exo’/’endo’ interaction with water. Biocompatibility .Encapsulation of  drug molecules with water soluble carbon nanotube and their  drug delivery at a  specific site..

 

AFM Images of wsCNT

    

Tetrapodal Junction                                                  5-end Junction

      

Y junction                                                        Cap end

 

Aqueous solutions of wsCNT at different concentrations (a): 0.07 mg/ml aqueous solution of wsCNT, (b, c, d): 25%, 50% and 75% dilution of (a) respectively

 

    

TEM images                                             Flame                                                                            SEM images

MWCNT from Candle soot

     

Cluster of E-coli flourescing with water soluble CNT

 

Mimic of  cells   as Chemical Darwinism The process can be viewed by fluorescence

Biogeoinorganic chemistry and Environment                                                                                      Top

Arsenic pollution                                                                                               

 

    

A typical widely used tubewell contaminated with arsenic (Shuklaganj, Kanpur) displaying unhygienic surroundings with waterlogged,

Microorganisms have been implicated in the release of arsenic into drinking water involving bio-electrochemical reactions. Iron reducer has been shown to release captive arsenic from insoluble ferric oxyhydroxide– arsenic oxide adduct. Sulphate reducing bacteria (SRB) and Enterobacteriaceae may play a similar role by releasing hydrogen sulphide. The case of arsenic mobilization in water may be complex and varied. Arsenic contamination in Kanpur, northern India, 1000 km upstream of the Gangetic delta, added a new dimension to understanding the cause of its release in water. We propose that passive arsenic carried by the Ganges in the soil for centuries may be activated by unhygienic use of tubewells during the past three decades. We modelled the soil redox-chemistry prevalent under such conditions. We show that SRB grow in the vicinity of tubewells due to the availability of abundant food as fatty acids and sulphate as electron acceptors from soaps and detergents to release arsenic. In the absence of soap, Enterobacteriaceae play the same role. We also show that 26 commonly used soaps and detergents in India contain alarmingly high concentration of soluble arsenic, contaminating surface water.

 

Environment: Global warming and erratic rain fall: Besides  green house effect  the second cause is absorption of visible light  by  black carbon (BC) accumulated in aerosol in the atmosphere. Degradation of BC is not easy as these contains very stable carbon nano tube. Deposition of CNT on cobweb narrating the ready dispersion of CNTs in the environment from burning  fossil fuel  including burning of candle, oil lamp or even incense stick.

 


 

Computational Modeling:                                                                     Top

Density Functional Approach : Computational studies of Synthetic  and Computational Models of Sulfite Oxidase:

Simple low molecular weight inorganic model complex shows enzymatic kinetics similar to those of the native sulfite oxidase. The kinetic manifestation of such model reactions were tested by Density Functional Theory level of calculations by tracing the enthalpy of reaction profile and establishing the structure of the Michaelis complex.

a) LUMO of Mo-co; b) HOMO of HSO3- ; c) HOMO of PPh3 ; d) LUMO of [MoVIO2(mnt)2]2- ; e) LUMO of [MoVIO2(S2C2Me2)(SMe)]-

The 1D relaxed PES scan of Oax – Mo – S – CCH3 dihedral angles for [MoVIO2(S2C2Me2)(SMe)]-

 

Calculated reaction path in gas phase for the reaction of [MoVIO2(mnt)2]2- and [MoVIO2(S2C2Me2)(SMe)]-  with HSO3-.

Gas Phase ooptimized geometry

 

DFT correlation of metalloporphyrinogen and metallo-porphyrin:                                                      Top

 The nature of the metal d orbitals contributed to the molecular orbital of metallo-porphyrinogen and metallo-porphyrin 

Metal d-orbital of Fe(III) porphyrinogen

 

Metal d-orbital of Co(II) porphyrin : left is penta coordinated and right is hexa coordinated

       


 

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