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Understanding of
structure-function relationship of several oxomolybdo and oxotungstoenzymes
This aspect has several domains of Archaeal, Bacterial and Eucarial
origins. Representative systems
as
structural and functional models of Sulfite Oxidase
and DMSO Reductase family of enzymes:
Dissimilatory
Nitrate Reductase,
Polysulfide Reductase, non redox
Acetylene Hydratase,formate dehydrogenase and aldehyde ferredoxin
oxiodoreductase . |
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Black geyser in deep sea hydrothermal vent. This serves as the primitive environment on young earth and life still exists in such hostile niche with high hydrostatic pressure and high temperature under anoxic condition in the dark. The extremozymes found there were modeled as:
Functional model of P.furious ferredoxin aldehyde oxidoreductase
A model for formate dehydrogenase
Feed Stock Chemistry
Mo-cofactor from oxidised TMANOR
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Chemistry of [Et4N][MoIV(SPh)(PPh3)(mnt)2]
as an Analogue of Dissimilatory Nitrate Reductase with Its Inactivation
Similar to
Structural and Functional Analogue of the Active Site of Polysulfide
Mechanism How works in mitochondria
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Native cofactor in active site Supper imposed native and half reduced synthetic model
This reaction follows Michaelis -Menten Kinetics with sulfate and phosphate inhibition similar to native protein
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Properties of the synthesized complexes with the understanding of structure-function relationship are subjected to structural studies like detailed spectroscopic analysis followed by single crystal X-ray crystallography. Detailed redox reactions are studied to evaluate the basis for atom or electron transfer reactions. A rare type of induced electron reactions are also of interest to us. The kinetics of reactions with native substrates or model substrates are followed using synthesized systems with inhibition studies. Model active site-substrate interactions are correlated with electrostatic potential computations to understand in vivo enzymatic reactions. Current and sustained studies include to model (with the theme: 'stabilization of unusual oxidation states of transition metals' involving green chemistry): nitrogenase, molybdenum and tungsten dependent pterin(cofactor) containing oxido-reductase class of enzymes, non-redox enzyme acetyelene hydratase, hemo-proteins ( heme as prosthetic group) like cytochrome P-450, NO-synthase, cytochrome-c oxidase, nitrophorin, cofactor F430, and methane monooxygenase. |
On the evolution of porphyrin:
| Metal porphyrinogen and dehydrogenase reaction: Porphyrinogen, its complex redox chemistry: Structural studies include single crystal X-ray crystallography followed by detailed spectroscopic analysis which are correlated with electrostatic potential using DFT calculation. |
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Tetrakis-cyclohexyl porphyrinogen
Tetrakis-cyclohexyl Fe(III)porphyrinogen
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Tetrakis-cyclohexyl Fe(II)-Br porphyrinogen Tetrakis-cyclohexyl Fe(II)-I porphyrinogen |
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Reversible Penta- and Hexacoordination Motifs in [Co(TMPP)] Resulting in Interchange of 1D and 2D Supramolecular Designs
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| Activation of small molecules :Stabilization of unusual oxidation states of V, Cr, Mo, W, Ni, Fe, Co using NO+, CN- , C2H2, Sn2- and other p- bonding ligands and activation of small molecules like N2, CO2, CO, C2H2, CH4 and O2 involving synthesized transition metal complexes. . |
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pH Dependent
Interconversion of Dimeric and Monomeric Moybdenum(IV) / Tungsten(IV)
Bis(dithiolene) Complexes . |
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| Metal clusters : Synthesis of homonuclear and heteronuclear metal sulfido and oxo clusters. Metal sulfido cuboidal to cubane core conversion using electron precise rule. Synthesis of water soluble molybdenum and tungsten Keplerate . Copper -molybdenum antagonism in Teart disease, therapeutic use of thiomolybdate in Wilson disease. Structural model, [PPh4][Et4N]2[S2MoS2CuS2MoS2] of the hetero metal sulfido core of the orange protein (ORP) of the sulfate reducing organism, Desulfovibrio gigas : |
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Structure of native Orange Protein from Desulfovibriogigas |
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Structural mimicry : Structure of the synthesized model of Orange Protein |
| Supramolecular host-guest Chemistry: H-bonding interaction: An efficient and eco-friendly protocol was designed to synthesize calix[4]pyrroles and thermally induced conformational changes in meso-tetramethyl tetrakis(ethyl)calix[4]pyrrole neutral host-guest adducts were examined. |
![]() Halogen adduct |
![]() Methanol adduct Ethanol adduct |
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DMF adduct
DMSO adduct of β-substituted Calix[4] pyrrole
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| Fullerenes and carbon nanotubes. Easy methods of preparation of CNT. CNTs with several junctions. Functionalization of carbon nanotubes and investigation on their properties using EPR, NMR, electrochemistry, fluorescence, uv-visible-nir ir., ORD, FTIR, Raman spectroscopy, magnetisms , surface studies by AFM, TEM, SEM in relevance to their ‘exo’/’endo’ interaction with water. Biocompatibility .Encapsulation of drug molecules with water soluble carbon nanotube and their drug delivery at a specific site.. |
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AFM Images of wsCNT
Tetrapodal Junction 5-end Junction
Y junction Cap end Aqueous solutions of wsCNT at different concentrations (a): 0.07 mg/ml aqueous solution of wsCNT, (b, c, d): 25%, 50% and 75% dilution of (a) respectively
TEM images Flame SEM images MWCNT from Candle soot
Cluster of E-coli flourescing with water soluble CNT
Mimic of
cells as Chemical
Darwinism The process can be viewed by fluorescence
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Biogeoinorganic chemistry and Environment
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A typical widely used tubewell contaminated with arsenic (Shuklaganj, Kanpur) displaying unhygienic surroundings with waterlogged, Microorganisms have been implicated in the release of arsenic into drinking water involving bio-electrochemical reactions. Iron reducer has been shown to release captive arsenic from insoluble ferric oxyhydroxide– arsenic oxide adduct. Sulphate reducing bacteria (SRB) and Enterobacteriaceae may play a similar role by releasing hydrogen sulphide. The case of arsenic mobilization in water may be complex and varied. Arsenic contamination in Kanpur, northern India, 1000 km upstream of the Gangetic delta, added a new dimension to understanding the cause of its release in water. We propose that passive arsenic carried by the Ganges in the soil for centuries may be activated by unhygienic use of tubewells during the past three decades. We modelled the soil redox-chemistry prevalent under such conditions. We show that SRB grow in the vicinity of tubewells due to the availability of abundant food as fatty acids and sulphate as electron acceptors from soaps and detergents to release arsenic. In the absence of soap, Enterobacteriaceae play the same role. We also show that 26 commonly used soaps and detergents in India contain alarmingly high concentration of soluble arsenic, contaminating surface water.
Environment: Global warming and erratic rain fall: Besides green house effect the second cause is absorption of visible light by black carbon (BC) accumulated in aerosol in the atmosphere. Degradation of BC is not easy as these contains very stable carbon nano tube. Deposition of CNT on cobweb narrating the ready dispersion of CNTs in the environment from burning fossil fuel including burning of candle, oil lamp or even incense stick.
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Density
Functional Approach
| Simple low molecular weight inorganic model complex shows enzymatic kinetics similar to those of the native sulfite oxidase. The kinetic manifestation of such model reactions were tested by Density Functional Theory level of calculations by tracing the enthalpy of reaction profile and establishing the structure of the Michaelis complex. |
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a) LUMO of Mo-co; b) HOMO of HSO3- ; c) HOMO of PPh3 ; d) LUMO of [MoVIO2(mnt)2]2- ; e) LUMO of [MoVIO2(S2C2Me2)(SMe)]- |
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The 1D relaxed PES scan of Oax – Mo – S – CCH3 dihedral angles for [MoVIO2(S2C2Me2)(SMe)]-
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Calculated reaction path in gas phase for the reaction of [MoVIO2(mnt)2]2- and [MoVIO2(S2C2Me2)(SMe)]- with HSO3-. |
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Gas Phase ooptimized geometry |
DFT correlation of
metalloporphyrinogen and metallo-porphyrin:
The nature of the metal d orbitals contributed to the molecular orbital of metallo-porphyrinogen and metallo-porphyrin
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Metal d-orbital of Fe(III) porphyrinogen
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Metal d-orbital of Co(II) porphyrin : left is penta coordinated and right is hexa coordinated |