Group Members


Group_Photo
(Photo taken in July 2025)

Current Group Members

Ph.D Students

  1. Sameer Saurav
    My_Photo  
    • Date of Joining: December, 2021
    • Research Work: Host-Guest Binding Free Energies from Temperature Accelerated Sliced Sampling Simulations
    • Academic Background:

      • GATE (2014), CSIR-NET (2014)
      • B.S.-M.S. IISER-Kolkata (2014)

    • Email Id : sameers21[at]iitk.ac.in
  2. Jagori Sarkar
    My_Photo  
    • Date of Joining: July, 2023
    • Research Work: A Computational Study of Antimalarial Inhibitors Targeting Serine Hydroxymethyl Transferase (SHMT)
    • Academic Background:

      • GATE (2022)
      • M.Sc. University of Hyderabad, Hyderabad (2022)
      • B.Sc. Lady Brabourne College, Kolkata (2019)

    • Email Id : jagoris23[at]iitk.ac.in
  3. Sanyam Chetri
    My_Photo  
    • Date of Joining: July, 2023
    • Research Work: Development of inhibitior for beta-lactamase Enzymes
    • Academic Background:

      • GATE (2022)
      • M.Sc. IIT Mandi, Himachal Pradesh (2022)
      • B.Sc. Doon University, Dehradun, Uttarakhand (2020)

    • Email Id : sanyamc23[at]iitk.ac.in
  4. Ritacheta Sen
    My_Photo  
    • Date of Joining: July, 2025
    • Research Work: Development of enhanced sampling methods for large biological systems
    • Academic Background:

      • GATE (2025)
      • M.Sc. University of Calcutta, Kolkata (2023)
      • B.Sc. Lady Brabourne College, Kolkata (2021)

    • Email Id : ritachetas25[at]iitk.ac.in
  5. Sharif Ahmad Naikoo
    My_Photo  
    • Date of Joining: July, 2025
    • Research Work: Ab Initio MD using Hybrid DFT Functionals
    • Academic Background:

      • GATE (2023)
      • M.Sc. University of Kashmir (2023)
      • B.Sc. Govt degree college, Anantnag (2019)

    • Email Id : sanaikoo25[at]iitk.ac.in

Master Students

  • Sudharshana Karmakar
    My_Photo  
    • Date of Joining: 2025
    • Research Work: Development of tools to analyze high-dimensional free energy surfaces
    • Academic Background:

      • BT-MT: IIT Kanpur (Ongoing from 2021)

    • Email Id : skarmakar21[at]iitk.ac.in

Past Group Members

Ph.D Students

  1. Tushar K. Ghosh

    PhD Thesis Title: Ab Initio Molecular Dynamics Simulation of Catalytic Reactions by Rh/Al2O3 and Rh/TaON: Water Splitting and CO Oxidation
    Year Joined: July, 2009
    Year Completed: December, 2014
    Current Address: Synopsys (Quantum ATK)
  2. Ravi Tripathi

    PhD Thesis Title: Molecualr Mechanism of Antibiotic Resistance By Class-C and New Delhi Metallo Beta-Lactamases: A QM/MM Molecular Dynamics Study
    Year Joined: July, 2009
    Year Completed: February, 2015
    Current Address: Evonik, Germany
  3. Venkataramana Imandi

    PhD Thesis Title: Investigation of Mechanism and Kinetics of the Wacker Oxidation using ab Initio Molecular Dynamics
    Year Joined: July, 2010
    Year Completed: November, 2015
  4. Sudhir Kumar Sahoo

    PhD Thesis Title: Development of CPMD/GULP QM/MM Interface for Modeling Solids
    Year Joined: July, 2010
    Year Completed: January, 2017
    Current Address: Assistant Professor, Department of Chemistry, IIT Dharwad
  5. Shalini Awasthi

    PhD Thesis Title: Exploring High Dimensional Free Energy Surfaces: Novel Methods and Applications
    Year Joined: December, 2011
    Year Completed: December, 2017
    Current Address: Scientist, Eli Lilly and company, Bangalore, India
  6. Sooraj K.

    PhD Thesis Title: Density Functional Theory and Microkinetic Modeling of Chemical Reactions with Applications to Aerospace Industry, Biofuel Production and Synthetic Organic Chemistry
    Year Joined: July, 2011
    Year Completed: February, 2017
    Current Address: Assistant Professor, Department of Chemistry, IIT Madras
  7. Neha Vithani

    PhD Thesis Title: A QM/MM Molecular Dynamics Study of Enzymatic Reactions in Hydrophobic Amino-acid Substituted GTPases and Sugar Nucleotidyltransferases
    Year Joined: July, 2012
    Year Completed: June, 2018
    Current Address: OpenEye, Cadence Molecular Sciences, USA
  8. Chandan Kumar Das

    PhD Thesis Title: Elucidating the Catalytic Mechanism of B-Lactamase and Telomerase: A QM/MM Molecular Dynamics Study
    Year Joined: July, 2012
    Year Completed: October, 2018
    Current Address: Post Doctoral Fellow at the group of Prof. Maria Fyta, Computational Biotechnology, RWTH Aachen University, Germany
  9. Sagarmoy Mandal

    PhD Thesis Title: Ab Initio Molecular Dynamics with Hybrid Density Functionals: Implementation and Application
    Year Joined: July, 2014
    Year Completed: November, 2020
    Current Address: Tata Consultancy Services, Pune, India
  10. Kapakayala Anji Babu

    PhD Thesis Title: Boosting the Conformational Sampling of Biomolecular Systems: Novel Hydrid Local and Global Enhanced Sampling Approaches
    Year Joined: December, 2015
    Year Completed: September, 2022
    Current Address: Scientist, Senior Solutions Architect at Schrodinger, India
  11. Rahul Verma

    PhD Thesis Title: Modelling of Catalytic Reactions over Zeolites
    Year Joined: July, 2016
    Year Completed: August, 2023
    Current Address: Post Doctoral Fellow at North Carolina State University, USA
  12. Abhinav Gupta

    PhD Thesis Title: Improving the Exploration of High Dimensional Free Energy Surfaces using Sliced Sampling Approaches
    Year Joined: Dec, 2016
    Year Completed: May 11, 2024
    Current Address: Post Doctoral Fellow at Syracuse University, USA
  13. Shivani Verma

    PhD Thesis Title: Improving Alchemical Free Energy Calculations by Combining with Enhanced Sampling Methods
    Year Joined: July, 2017
    Year Completed: March 04, 2025
    Current Address: Post Doctoral Fellow at University of Jyvaskyla, Finland
  14. Vaishali Thakkur

    PhD Thesis Title: Designing Covalent Inhibitors for Serine beta-Lactamases and Development of QM/MM Methods
    Year Joined: July, 2018
    Year Completed: April 11, 2025
    Current Address: Prescience Insilico, Bangalore, India
  15. Ramsha Javed

    PhD Thesis Title: Efficient Sliced Sampling Techniques for Computing High Dimensional Free Energy Landscape
    Year Joined: Dec, 2017
    Year Completed: May 17, 2025
    Current Address: Post Doctoral Fellow at University of Jyvaskyla, Finland
  16. Ritama Kar

    PhD Thesis Title: Ab Initio Molecular Dynamics with Hybrid Density Functionals
    Year Joined: Dec, 2019
    Year Completed: Sep 04, 2025
    Current Address: Post Doctoral Fellow at Aix-Marseille University, France
  17. Shitanshu Bajpai

    PhD Thesis Title: Methods and Implementation of Enhanced Sampling Techniques for Modeling Rare Events in Biomolecular Systems
    Year Joined: July, 2019
    Year Completed: Oct 16, 2025
    Current Address: Post Doctoral Fellow at University of New Hampshire, Durham, USA

Post Docs.

  • Dr. Bikramjit Sharma

    Year: 2025-2026
    Project Work: Modelling GPCRs (Jointly with Prof. Sai Pydi, BSBE)
    Current Address: Assistant Professor, Birangana Sati Sadhani Rajyik Vishwavidyalaya, Assam
  • Dr. Pushyaraga PV

    Year: 2024
    Project Work: Modelling GPCRs (Jointly with Prof. Sai Pydi, BSBE)
    Current Address: Dept. Chemistry, IIT Bombay
  • Dr. Paramita Ghosh

    Year: 2020-2023
    Project Work: Development of AMDKIIT, an Ab Initio Molecular Dynamics Software
    Current Address: CDAC, Pune
  • Dr. Sudhir Kumar Sahoo

    Year: 2022
    Project Work: Development of AMDKIIT, an Ab Initio Molecular Dynamics Software
    Current Address: Assistant Professor, IIT Dharwad
  • Dr. Saurabh Srivastava

    Year: 2019-2021
    Project Work: Study of Ester Hydrolysis Reaction Mechanism in Neutral Medium using Enhanced Sampling Simulations
    Current Address: Assistant Professor, Department of Chemistry, Manipal University, Jaipur, India
  • Dr. Shubhandra Tripathi

    Year: 2017-2021
    Project Work: Study of protein-drug interactions using enhanced sampling simulations
    Current Address: Scientist at Aganitha, Hyderabad, India
  • Dr. Arun Kumar

    Year: 2014-2015
    Project Work: Modeling High Performance Polymer / Oxide Interface
    Current Address: Assistant Professor in the Department of Physics, Central University of Haryana
  • Dr. Sudharshan Pandiyan

    Year: 2012-2013
    Project Work: Mechanical Properties of High Performance Polymers (HPP)
    Current Address: -

Master Students (PDF)

Project Students

  • Satyendra Soni
    Project Associate
    Project Title: Developement of global optimizers
  • Shitanshu Bajpai
    Project Associate
    Project Title: Development of global optimization techniques based on minima hopping
  • Naveena Raju
    Project Associate
    Project Title: Oxidation reactions of high-performance polymers


Last updated on Aug 30 (2025) by Nisanth N. Nair